From: MIENTURNET: an interactive web tool for microRNA-target enrichment and network-based analysis
Tools | miTEA | GSEA/MSigDB | miEAA | miRNet | miRTargetLink | MIENTURNET |
---|---|---|---|---|---|---|
Reference | [12] | [13] | [14] | [15] | [16] | |
Last Release | February 2013 | July 2018 | April 2016 | March 2018 | April 2016 | March 2019 |
Input list | ||||||
Gene identifiers | Gene symbol, RefSeq, Uniprot, Unigene, Ensembl | Gene symbol, Entrez | - | Gene symbol, Ensembl, Entrez | Gene symbol | Gene symbol |
miRNA identifiers ∗ | - | - | ID | ID, Accession | ID | ID |
Others | - | - | - | ✓ | - | - |
Queries | ||||||
Multiple item | ✓ | ✓ | ✓ | ✓ | ✓ | ✓ |
Organisms | ||||||
Species ∗∗ | Human, Mouse, Rat, Zebrafish, Fruit fly | Human | Human | Human, Mouse, Rat, Cattle, Chicken, Zebrafish, Fruit fly, Worm, Helminth | Human | Human, Mouse, Rat, Zebrafish, Fruit fly, Worm |
Species # | 5 | 1 | 1 | 9 | 1 | 6 |
Reference database | ||||||
Predicted target genes | TargetScan, MicroCosm, EIMMo | MSigDB | - | miRanda ∗∗∗ | miRanda | TargetScan |
Experimental target genes | - | - | miRTarBase | TarBase, miRTarBase, miRecords | miRTarBase, in-house data | miRTarBase |
Others | - | - | ✓ | ✓ | - | - |
Statistical analysis | ||||||
Differential expression | - | - | - | ✓ | - | - |
Functional enrichment | - | ✓ | ✓ | ✓ | ✓ | ✓ |
miRNA-target enrichment | ✓ | ✓ | ✓ | - | - | ✓ |
MTI network | ||||||
Visualization | - | - | - | ✓ | ✓ | ✓ |
Customization | - | - | - | ✓ | ✓ | ✓ |
Filtering | - | - | - | ✓ | ✓ | ✓ |
MTI network analysis | ||||||
Degree | - | - | - | ✓ | - | ✓ |
Betweenness | - | - | - | ✓ | - | ✓ |
Closeness | - | - | - | - | - | ✓ |
Average shortest path | - | - | - | - | - | ✓ |
Eccentricity | - | - | - | - | - | ✓ |
Clustering coefficient | - | - | - | - | - | ✓ |
Fit power low | - | - | - | - | - | ✓ |