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Table 2 Pairwise comparison (percentage overlap) of hubs, MDS and MCDS for the BRCA dataset

From: Topology Consistency of Disease-specific Differential Co-regulatory Networks

Methods

edgeR

voom

VST

DESeq

96,83,81

91,80,79

96,83,80

edgeR

-

86,83,83

70,72,75

voom

-

-

83,85,88

  1. Pairwise comparison of hubs(left), MDS(middle) and MCDS(right numbers) for the networks constructed from the set of DE genes detected by DESeq, edgeR, voom and VST methods for the BRCA dataset
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BMC Bioinformatics

ISSN: 1471-2105

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