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Table 2 Pairwise comparison (percentage overlap) of hubs, MDS and MCDS for the BRCA dataset

From: Topology Consistency of Disease-specific Differential Co-regulatory Networks

Methods edgeR voom VST
DESeq 96,83,81 91,80,79 96,83,80
edgeR - 86,83,83 70,72,75
voom - - 83,85,88
  1. Pairwise comparison of hubs(left), MDS(middle) and MCDS(right numbers) for the networks constructed from the set of DE genes detected by DESeq, edgeR, voom and VST methods for the BRCA dataset