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Fig. 4 | BMC Bioinformatics

Fig. 4

From: DECA: scalable XHMM exome copy-number variant calling with ADAM and Apache Spark

Fig. 4

Comparison between DECA and XHMM results. a Concordance of XHMM and DECA CNV calls for the full 1000 Genomes Project phase 3 WES dataset (s = 2535) when starting from the same read-depth matrix (t = 191,396). Exact matches have identical breakpoints and copy number, while overlap matches do not have identical breakpoints. b Range of Some Quality (SQ) scores computed by DECA compared to XHMM probability for exact matching variants

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