Fig. 6
From: Robust structure measures of metabolic networks that predict prokaryotic optimal growth temperature
Our network reconstruction procedure. a Step 1: From cDNA fasta file, get gene labels, b Step 2: From KEGG gene entries, get EC codes, c Step 3: From KEGG enzyme entries, get substrates and products, d Step 4: Build graph and filter ubiquitous metabolites. Ubiquitous metabolites : H2O, ATP, ADP, NAD+, NADH, NADPH, NADP+, CO2, ammonia, sulfate, thioredoxin, phosphate, PPi, H+, e Final graph