Fig. 5
From: SLR: a scaffolding algorithm based on long reads and contig classification
There are six contigs (c1,c2,c3,c4,c5,andc6) that can be aligned with the long read lr1. Because c1 and c2 are simultaneously aligned with the left end of lr1, SLR retains only contig c1 which has the greatest alignment length, and deletes the alignment information between c2 and lr1. Because c5 and c6 have been simultaneously aligned with the right end of lr1, we keep only c5, and delete the alignment information between c6 and lr1. Finally, SLR determines the orders and orientations of c1, c3, c4 and c5, which form a local scaffold