Table 4 Running time and peak memory
From: SLR: a scaffolding algorithm based on long reads and contig classification
Dataset | Â | Running time | Â | Peak memory (G) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | SSPACE-LR | LINKS | npScarf | SLR | Â | SSPACE-LR | LINKS | npScarf | SLR |
E. coli_1_SMRT | Â | 41m42s | 1m42s | 26m34s | 26m58s | Â | 1.00 | 6.23 | 10.28 | 1.04 |
E. coli_2_SMRT | Â | 42m12s | 1m42s | 26m46s | 28m17s | Â | 1.00 | 6.22 | 10.28 | 1.17 |
S. cerevisiae_1_SMRT | Â | 880m22s | 38m26s | 929m36s | 907m23s | Â | 3.96 | 93.27 | 10.28 | 1.86 |
S. cerevisiae_2_SMRT | Â | 1162m28s | 40m35s | 1012m27s | 957m59s | Â | 3.96 | 93.3 | 10.28 | 3.60 |
Chr X_1_SMRT | Â | 8413m53s | 41m2s | 6617m53s | 7782m13s | Â | 12.56 | 114.2 | 12.82 | 3.98 |
E. coli_1_ONT | Â | 46m25s | 2m22s | 28m6s | 26m57s | Â | 1.02 | 8.60 | 10.28 | 1.05 |
E. coli_2_ONT | Â | 47m57s | 2m25s | 28m17s | 28m42s | Â | 1.01 | 8.60 | 10.28 | 1.11 |
S. cerevisiae_1_ONT | Â | 676m26s | 41m20s | 962m51s | 1001m25s | Â | 3.43 | 117.97 | 10.28 | 1.84 |
S. cerevisiae_2_ONT | Â | 830m48s | 40m54s | 1046m16s | 1051m53s | Â | 3.52 | 117.99 | 10.28 | 3.47 |