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Table 1 Mean TC and SP Scores for 14 Aligners on OXBench

From: ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function

AlignerMean TC scoreMean SP score
ProbPFP81.7090.15
Probalign*81.68**89.97*
ProbCons80.8689.68
T-Coffee80.5089.52
PicXAA80.7489.64
CONTRAlign79.8789.34
COBALT79.7388.96
Clustal Ω79.9988.91
MUSCLE80.6789.50
KALIGN78.8888.39
MAFFT77.9688.00
ClustalW80.1689.43
Align-m76.0686.95
DIALIGN72.1483.97
  1. The scores in this table are multiplied by 100. In each column, the maximum score is highlighted in bold, while the second highest score is displayed between two asterisks