Skip to main content

Table 1 Mean TC and SP Scores for 14 Aligners on OXBench

From: ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function

Aligner

Mean TC score

Mean SP score

ProbPFP

81.70

90.15

Probalign

*81.68*

*89.97*

ProbCons

80.86

89.68

T-Coffee

80.50

89.52

PicXAA

80.74

89.64

CONTRAlign

79.87

89.34

COBALT

79.73

88.96

Clustal Ω

79.99

88.91

MUSCLE

80.67

89.50

KALIGN

78.88

88.39

MAFFT

77.96

88.00

ClustalW

80.16

89.43

Align-m

76.06

86.95

DIALIGN

72.14

83.97

  1. The scores in this table are multiplied by 100. In each column, the maximum score is highlighted in bold, while the second highest score is displayed between two asterisks
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us