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Table 2 Mean TC and SP Scores for 14 Aligners on BAliBASE

From: ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function

AlignerMean TC scoreMean SP score
ProbPFP*67.03**82.50*
Probalign67.2782.53
ProbCons65.2281.55
T-Coffee64.9380.82
PicXAA66.0881.33
CONTRAlign58.1077.59
COBALT57.4976.08
Clustal Ω59.3875.96
MUSCLE58.2775.60
KALIGN59.6676.99
MAFFT52.5872.46
ClustalW49.2169.63
Align-m56.0471.45
DIALIGN48.2268.63
  1. The scores in this table are multiplied by 100. In each column, the maximum score is highlighted in bold, while the second highest score is displayed between two asterisks