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Table 3 Mean TC and SP Scores for 14 Aligners on SABmark

From: ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function

AlignerMean TC scoreMean SP score
ProbPFP39.5659.84
Probalign38.6359.53
ProbCons39.17*59.69*
T-Coffee*39.53*59.14
PicXAA39.1159.37
CONTRAlign35.5957.54
COBALT36.0056.71
Clustal Ω35.4755.02
MUSCLE33.4754.51
KALIGN33.2252.13
MAFFT32.5752.63
ClustalW31.3751.92
Align-m31.0746.19
DIALIGN27.1147.09
  1. The scores in this table are multiplied by 100. In each column, the maximum score is highlighted in bold, while the second highest score is displayed between two asterisks