Table 3 Comparison of the main functions provided by PROMO and by other tools

Precompiled datasets

V

X

V

X

V

V

Preprocessing

V

V

X

V

X

V

Data visualization

V

V

V

V

V

V

Sample clustering

V

V

X

V

V

V

Feature clustering

V

V

V

V

X

V

Sample clusters enrichment tests (clinical data)

V

X

V

X

V

X

Feature clusters enrichment tests

V

V

X

V

V

V

Survival analysis

V

X

V

X

V

V

Biomarker discovery

V

V

X

V

X

V

Automatic decision tree generation

V

X

X

X

X

X

Inter-omic correlation identification

V

X

X

X

V

X

Integrative multi-omic sample clustering

V

X

X

X

X

X