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Table 3 Comparison of the main functions provided by PROMO and by other tools

From: PROMO: an interactive tool for analyzing clinically-labeled multi-omic cancer datasets

FunctionPROMOExpander [45]XENA [20]Perseus [46]KnowEng [47]O-Miner [48]
Precompiled datasetsVXVXVV
PreprocessingVVXVXV
Data visualizationVVVVVV
Sample clusteringVVXVVV
Feature clusteringVVVVXV
Sample clusters enrichment tests (clinical data)VXVXVX
Feature clusters enrichment testsVVXVVV
Survival analysisVXVXVV
Biomarker discoveryVVXVXV
Automatic decision tree generationVXXXXX
Inter-omic correlation identificationVXXXVX
Integrative multi-omic sample clusteringVXXXXX