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Fig. 2 | BMC Bioinformatics

Fig. 2

From: The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment

Fig. 2

Seed stability. (left) Relative number of recovered verified targets among the top-100 predictions of each sRNA for different thresholds on a seed’s overall energy and hybridization energy, i.e. ball = [seedMaxE] and diamond = [seedMaxEhybrid], respectively. Results including GU base pairs are in blue while values for seeds without GU base pairs are in green. (right) Relative overall runtime to process each parameter set. The dotted gray lines mark respective values of IntaRNA with default parameters

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BMC Bioinformatics

ISSN: 1471-2105

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