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Fig. 3 | BMC Bioinformatics

Fig. 3

From: The impact of various seed, accessibility and interaction constraints on sRNA target prediction- a systematic assessment

Fig. 3

Seed accessibility. (left) Relative number of recovered verified targets among the top-100 predictions of each sRNA for different thresholds on a seed’s accessibility in terms of minimal unpaired probability of both seed regions [seedMinPu] for different seed lengths [seedBP]. (right) Relative overall runtime to process each parameter set. The (top) and (bottom) graphs show results when GU base pairs are allowed or forbidden in seeds, respectively. The dotted gray lines mark respective values of IntaRNA with default parameters

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