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Table 1 controlled vocabulary usage and source overview

From: Annot: a Django-based sample, reagent, and experiment metadata tracking system

Ontology Vocabulary Source Official Url
BAO clonality, genetic modification, growth property, immunology isotype, transient modification bio ontology http://www.bioassayontology.org/
DOID disease bio ontology http://diseaseontology.sourceforge.net/
EFO unit bio ontology http://www.ebi.ac.uk/efo
MESH cell type bio ontology http://www.nlm.nih.gov/mesh/meshhome.html
NCBITAXON organism bio ontology http://www.ncbi.nlm.nih.gov/taxonomy
OBI sex bio ontology http://purl.obolibrary.org/obo/obi
SNOMEDCT antibody part, ethnicity bio ontology http://www.ihtsdo.org/
UBERON organ, tissue bio ontology http://uberon.org/
CELLOSAURUS sample cellosaurus http://web.expasy.org/cellosaurus/
CHEBI compound ebi http://www.ebi.ac.uk/chebi
ENSG gene ensembl http://www.ensembl.org/index.html
GENEONTOLOGY gene ontology, biological process, cellular component (protein complex), molecular function gene ontology http://geneontology.org/
UNIPROT protein uniprot http://www.uniprot.org/proteomes/
OWN dye, health status, provider, sample entity, verification profile, yield fraction own https://gitlab.com/biotransistor/annotTutorial/