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Fig. 1 | BMC Bioinformatics

Fig. 1

From: Optimal sequencing depth design for whole genome re-sequencing in pigs

Fig. 1

Data processing pipeline. Our pipeline was identical for each sample. Original aligned bam files were mapped with clean fastq data. Then, we extracted different proportions of paired reads randomly from the original bam files to build samples with different depths. Markduplicates, Indel realignment and Base recalibration were applied for all bam files and the same procedures were used for SNP calling and filtering

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