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Fig. 7 | BMC Bioinformatics

Fig. 7

From: Optimal sequencing depth design for whole genome re-sequencing in pigs

Fig. 7

Fold change between multisample and single-sample calling and the quality of variants. (a) Fold change between multisample and single-sample calling. The ratio of common variants detected in multisample calling to that in single-sample calling. The statistics for multisample calling of all sites (m-calling-all) or only the sites with at least one nonreference allele (m-calling-Alt) are indicated separately. (b) Discordance rate with Beadchip data. Single-sample and multisample calling was compared to PorcineSNP80K BeadChip data for each Yorkshire subsample. For the comparison between single-sample calling and multisample calling, only the common sites of the samples between the PorcineSNP80K BeadChip and whole-genome sequencing SNPs that contained at least one nonreference allele were calculated

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