From: Optimal sequencing depth design for whole genome re-sequencing in pigs
Breed | Sample | Total Variants | %variants in dbSNP | Ti/Tv Ratio | Exons | LoF |
---|---|---|---|---|---|---|
DD | SAMN05791661 | 4,361,699 | 83.84 | 2.18 | 28,321 | 11,783 |
DD | SAMN05791665 | 4,720,118 | 84.00 | 2.20 | 31,091 | 13,272 |
DD | SAMN05791663 | 4,761,804 | 85.38 | 2.26 | 29,916 | 11,992 |
LL | SAMN05791650 | 4,664,664 | 84.42 | 2.16 | 29,287 | 12,430 |
LL | SAMN05791651 | 5,255,293 | 85.29 | 2.21 | 33,575 | 13,768 |
LL | SAMN05791660 | 5,433,413 | 86.27 | 2.25 | 35,521 | 14,111 |
YY | S494203 | 5,730,270 | 86.99 | 2.31 | 39,094 | 15,304 |
YY | S409308 | 5,528,070 | 86.74 | 2.30 | 38,986 | 15,630 |
YY | S474607 | 6,047,346 | 86.81 | 2.28 | 38,828 | 15,482 |