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Table 1 Statistics of the transcriptome assemblies using five representative assemblers with 32 Gb sequencing data

From: Optimized sequencing depth and de novo assembler for deeply reconstructing the transcriptome of the tea plant, an economically important plant species

Assembler

No. transcript

Total length (bp)

Maximum transcript (bp)

Average length (bp)

N50 (bp)

BinPacker

423,768

368,682,397

21,031

870.01

1348

Bridger

380,605

364,039,338

22,041

956.48

1539

SOAPdenovo

238,364

99,912,984

14,281

419.16

443

Trans-ABySS

404,455

191,731,319

17,014

474.05

527

Trinity

404,125

225,905,337

14,565

559

701