Table 2 Summary of the Bridger assemblies using different k-mer values
k-mer | No. transcripts | Maximum length (bp) | Average length (bp) | N50 (bp) | BUSCOa | ||
|---|---|---|---|---|---|---|---|
C | F | M | |||||
19 | 273,893 | 27,833 | 1003.51 | 1531 | 56.10% | 22.30% | 21.60% |
21 | 350,330 | 28,766 | 987.98 | 1554 | 86.70% | 6.70% | 6.60% |
23 | 370,677 | 18,579 | 948.81 | 1524 | 91.20% | 4.40% | 4.40% |
25 | 380,605 | 22,041 | 956.48 | 1539 | 92.50% | 3.80% | 3.70% |
27 | 383,138 | 20,166 | 951.48 | 1524 | 93.00% | 3.30% | 3.70% |
29 | 383,689 | 19,347 | 950.33 | 1513 | 86.70% | 6.70% | 6.60% |
32 | 390,761 | 19,996 | 896.6 | 1430 | 92.70% | 3.30% | 4.00% |