TY - JOUR AU - Baran-Gale, J. AU - Chandra, T. AU - Kirschner, K. PY - 2018 DA - 2018// TI - Experimental design for single-cell RNA sequencing JO - Brief Funct Genomics VL - 17 UR - https://doi.org/10.1093/bfgp/elx035 DO - 10.1093/bfgp/elx035 ID - Baran-Gale2018 ER - TY - JOUR AU - Navin, N. E. PY - 2015 DA - 2015// TI - The first five years of single-cell cancer genomics and beyond JO - Genome Res VL - 25 UR - https://doi.org/10.1101/gr.191098.115 DO - 10.1101/gr.191098.115 ID - Navin2015 ER - TY - STD TI - Fisher RA. On the Interpretation of χ2 from Contingency Tables, and the Calculation of P. J R Stat Soc. 1922;85(1). https://doi.org/10.2307/2340521. ID - ref3 ER - TY - JOUR AU - Levin, B. PY - 1981 DA - 1981// TI - A representation for multinomial cumulative distribution functions JO - Ann Stat VL - 9 UR - https://doi.org/10.1214/aos/1176345593 DO - 10.1214/aos/1176345593 ID - Levin1981 ER - TY - JOUR AU - Frigo, M. AU - Johnson, S. G. PY - 2005 DA - 2005// TI - The design and implementation of FFTW3 JO - Proc IEEE VL - 93 UR - https://doi.org/10.1109/JPROC.2004.840301 DO - 10.1109/JPROC.2004.840301 ID - Frigo2005 ER - TY - STD TI - Jaynes ET. Probability theory: the logic of science: Cambridge University Press; 2003. https://books.google.com/books?id=UjsgAwAAQBAJ. Accessed 11 Sept 2009. UR - https://books.google.com/books?id=UjsgAwAAQBAJ ID - ref6 ER - TY - STD TI - Cheng CW, Hung YC, Balakrishnan N. rBeta2009: The Beta Random Number and Dirichlet Random Vector Generating Functions. 2012. https://cran.r-project.org/package=rBeta2009. Accessed 11 Sept 2009. UR - https://cran.r-project.org/package=rBeta2009 ID - ref7 ER - TY - JOUR AU - Hung, Y. C. AU - Balakrishnan, N. AU - Cheng, C. W. PY - 2011 DA - 2011// TI - Evaluation of algorithms for generating Dirichlet random vectors JO - J Stat Comput Simul VL - 81 UR - https://doi.org/10.1080/00949650903409999 DO - 10.1080/00949650903409999 ID - Hung2011 ER - TY - JOUR AU - Gao, R. AU - Davis, A. AU - McDonald, T. O. AU - Sei, E. AU - Shi, X. AU - Wang, Y. AU - Tsai, P. -. C. PY - 2016 DA - 2016// TI - Punctuated copy number evolution and clonal stasis in triple-negative breast cancer JO - Nat Genet VL - 48 UR - https://doi.org/10.1038/ng.3641 DO - 10.1038/ng.3641 ID - Gao2016 ER - TY - CHAP AU - Gotelli, N. J. AU - Colwell, R. K. PY - 2011 DA - 2011// TI - Estimating species richness BT - Biological Diversity. Frontiers in Measurement and Assessment UR - https://doi.org/10.2307/3547060 DO - 10.2307/3547060 ID - Gotelli2011 ER - TY - STD TI - Shen TJ, Chao A, Lin CF. Predicting the number of new species in further taxonomic sampling. Ecology. 2003;84(3):798–804. https://doi.org/10.1890/0012-9658(2003)084[0798:PTNONS]2.0.CO;2. ID - ref11 ER - TY - STD TI - Svensson V, Natarajan KN, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA. Power analysis of single-cell RNA-sequencing experiments. Nat Methods. 2017;14(4):381–7. https://doi.org/10.1038/nmeth.4220. ID - ref12 ER - TY - STD TI - Jenkins D, Faits T, Khan MM, Briars E, Pro SC, Johnson WE. singleCellTK: Interactive Analysis of Single Cell RNA-Seq Data. 2018. https://doi.org/10.18129/B9.bioc.singleCellTK. ID - ref13 ER - TY - STD TI - Svensson V, da Veiga Beltrame E, Pachter L. Quantifying the tradeoff between sequencing depth and cell number in single-cell RNA-seq. bioRxiv. 2019. https://doi.org/10.1101/762773. ID - ref14 ER - TY - STD TI - Sun R, Hu Z, Sottoriva A, Graham TA, Harpak A, Ma Z, Fischer JM, Shibata D, Curtis C. Between-region genetic divergence reflects the mode and tempo of tumor evolution. Nat Genet. 2017:1–13. https://doi.org/10.1038/ng.3891. ID - ref15 ER -