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Table 4 Comparison of protein ratio estimations with or without peptide quality control

From: Quality control of imbalanced mass spectra from isotopic labeling experiments

Protein YCR012W 1:1 Sample YPL061W 1:1 Sample YBR118W 1.5:1 Sample YPL240C 1.5:1 Sample
Assessor Pep. Num. Pep. Ratio Pep. Num. Pep. Ratio Pep. Num. Pep. Ratio Pep. Num. Pep. Ratio
Without assessor 153 1.7109 ±3.6754 27 0.9459 ±0.3516 68 2.6947 ±7.4300 33 1.6364 ±1.0504
XGBoost assessor 131 1.1922 ±0.3274 25 0.9484 ±0.3636 28 1.7054 ±0.3479 4 1.4675 ±0.5568