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Table 2 Summary of the experimental scRNA-seq datasets used for hyperparameter optimisation and method evaluation

From: Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis

RepositorySource# cell# classRef.ProtocolPurpose
GSE60361Mouse cortex30057[33]SMARTerOptimisation
GSE45719Mouse embryogenesis3008[34]SMART-seq2Optimisation
GSE67835Adult and fetal human brain4668[35]SMARTerOptimisation
E_MTAB_3929Human embryogenesis15295[36]SMART-seq2Optimisation
GSE84371Mouse neurons14028[37]Smart-seq2Evaluation
GSE82187Mouse striatum70510[38]SMARTer & Smart-seq2Evaluation
Broad portalHuman archived brain1496319[39]Drop-seqEvaluation
Broad portalMouse archived brain1331326[39]Drop-seqEvaluation