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Table 2 Proportion of predicted peptides by PEPOP and by the random method having a Se and a PPV above the threshold, without taking into account aa positions (WTK) and by taking into account aa positions (TK)

From: Benchmarking the PEPOP methods for mimicking discontinuous epitopes

Se and PPV thresholdProportion of predicted peptides by
PEPOP (WTK)random (WTK)PEPOP (TK)random (TK)
0.521,4715,692,10
0.67,553,570,770
0.71,720,280,180
0.80,14000