Fig. 5

Procedure of clmDCA to predict inter-residue contacts. a For a query protein (1wlg_A as an example), we identified its homologues by running HHblits [59] against nr90 sequence database (parameter setting: j: 3, id: 90, cov: 70) and constructed multiple sequence alignment of these proteins. b The correlation among residues in MSA was disentangled using composite likelihood maximization technique, generating prediction of inter-residue contacts. c The predicted contacts were fed into a deep neural network for refinement. d The refined prediction of inter-residue contacts