Attention mechanism enhanced LSTM with residual architecture and its application for protein-protein interaction residue pairs prediction

Table 1 The accuracy order of dimers in test set

Accuracy order	layer _10	layer _20	layer _30	layer _40	layer _50	layer _60	layer _70	layer _56	layer _58	layer _59	layer _60	layer _61	layer _62
1H9D	0.002534	0.003481	0.000013	0.000040	0.000067	0.000053	0.000747	0.003801	0.001147	0.000854	0.000053	0.017938	0.001227
1GL1	0.018904	0.006083	0.012480	0.000708	0.003592	0.005086	0.008416	0.011222	0.000105	0.001363	0.005086	0.005034	0.000026
2G77	0.009398	0.006355	0.002103	0.000076	0.001325	0.000636	0.000098	0.002614	0.001325	0.000443	0.000636	0.000210	0.002914
2VDB	0.000991	0.000991	0.002419	0.000091	0.001487	0.000202	0.000417	0.002680	0.001213	0.000972	0.000202	0.000913	0.004108
1KTZ	0.011788	0.006598	0.004096	0.007914	0.014994	0.002094	0.022055	0.060532	0.005134	0.003077	0.002094	0.034992	0.004874
1S1Q	0.003033	0.002597	0.000437	0.002757	0.000827	0.000758	0.001126	70.001815	0.003699	0.006112	0.000758	0.000184	0.009720
1BUH	0.000137	0.002547	0.001425	0.010694	0.007806	0.009923	0.000742	0.004908	0.003434	0.001229	0.009923	0.016499	0.000185
1BKD	0.003846	0.000317	0.002938	0.002416	0.000311	0.000227	0.000386	0.000053	0.000945	0.002301	0.000227	0.000724	0.001468
1GPW	0.000556	0.000281	0.004957	0.001203	0.001449	0.000386	0.000311	0.002241	0.000160	0.000226	0.000386	0.000647	0.000496
1SYX	0.000989	0.006525	0.000537	0.000141	0.001271	0.000876	0.001864	0.001328	0.000141	0.009181	0.000876	0.001977	0.002740
1Z5Y	0.029783	0.001220	0.001341	0.000157	0.006787	0.000254	0.003635	0.001981	0.004903	0.008816	0.000254	0.000157	0.002778
mean	0.007451	0.003363	0.002977	0.002382	0.003629	0.001863	0.003618	0.008470	0.002019	0.003143	0.001863	0.007207	0.002776

Note: mean means the average of columns and the bold fonts are the minimal mean values of the corresponding model and the layer _m means that the layer number is m

ISSN: 1471-2105