Attention mechanism enhanced LSTM with residual architecture and its application for protein-protein interaction residue pairs prediction

Table 3 The prediction results of layer _60_unit_8 in test set

PDB Code	1H9D	1GL1	2G77	2VDB	1KTZ	1S1Q	1BUH	1BKD	1GPW	1SYX	1Z5Y
Protein function	OX	EI	OG	OX	OR	OX	EI	OG	OX	OX	ES
RFPP	4	194	142	31	113	33	1017	73	77	31	21
Number of surface residue pair	74980	38141	223440	153360	53955	43520	102490	321630	199500	35400	82800
Accuracy order(%0)	0.053	5.086	0.636	0.202	2.094	0.758	9.923	0.227	0.386	0.876	0.254
NCPD	1%0			3 %%				8 %%
	8			4				7
Number of interface residue pair	501	300	425	382	188	245	301	687	434	210	264
Random experiment	141	124	442	364	274	173	317	413	401	165	296

Note: NCPD(m%0)=n means that there are n dimers which meet the in equation accuracy order ≤ m%0, and the result of last row will be explained in next section

ISSN: 1471-2105