From: Distinguishing successive ancient polyploidy levels based on genome-internal syntenic alignment
Model \(M\in \mathscr {M}\) | Â | Â | Â |
---|---|---|---|
Triplet \(\Delta \in \mathscr {T}\) | (2,2,2) | (3,2,2) | (2,3,2) |
{t1,t1,t1} | - | u′(1+v)3(1+w)3 | - |
{t1,t1,t2} | 2uv(1+v)(1+w)3 | 2(3u′+u)v(1+v)(1+w)3 | 2u(3v′+v) |
 |  |  | ×(1+2v′+v)(1+w)3 |
{t1,t2,t2} | - | - | - |
{t2,t2,t2} | - | - | (1+u)v′(1+w)3 |
{t2;t2;t3} | 2(1+u)vw(1+w) | 2(1+2u′+u)vw(1+w) | 2(1+u)(3v′+v)w(1+w) |
{t2,t3,t3} | - | - | - |
{t3,t3,t3} | - | - | - |
{t1,t1,t3} | 2u(1+v)2w(1+w) | 2(3u′+u)(1+v)2w(1+w) | 2u(1+2v′+v)2w(1+w) |
{t1,t3,t3} | - | - | - |
{t1,t2,t3} | - | - | - |
model \(M\in \mathscr {M}\) | Â | Â | Â |
triplet \(\Delta \in \mathscr {T}\) | (2,2,3) | (2,3,3) | (3,2,3) |
{t1,t1,t1} | - | - | u′(1+v)3 |
 |  |  | ×(1+2w′+w)3 |
{t1,t1,t2} | 2uv(1+v) | 2u(3v′+v)(1+2v′+v) | 2(3u′+u)v(1+v) |
 | ×(1+2w′+w)3 | ×(1+2w′+w)3 | ×(1+2w′+w)3 |
{t1,t2,t2} | - | - | - |
{t2,t2,t2} | - | (1+u)v′ | - |
 |  | ×(1+2w′+w)3 |  |
{t2;t2;t3} | 2(1+u)v | 2(1+u)(3v′+v) | 2(1+2u′+u)v |
 | ×(3w′+w)(1+2w′+w) | ×(3w′+w)(1+2w′+w) | ×(3w′+w)(1+2w′+w) |
{t2,t3,t3} | - | - | - |
{t3,t3,t3} | (1+u)(1+v)w′ | (1+u)(1+2v′+v)w′ | (1+2u′+u)(1+v)w′ |
{t1,t1,t3} | 2u(1+v)2 | 2u(1+2v′+v)2 | 2(3u′+u)(1+v)2 |
 | ×(3w′+w)(1+2w′+w) | ×(3w′+w)(1+2w′+w) | ×(3w′+w)(1+2w′+w) |
{t1,t3,t3} | - | - | - |
{t1,t2,t3} | - | - | - |
model \(M\in \mathscr {M}\) | Â | Â | Â |
triplet \(\Delta \in \mathscr {T}\) | (3,3,2) | (3,3,3) | Â |
{t1,t1,t1} | u′(1+2v′+v)3(1+w)3 | u′(1+2v′+v)3(1+2w′+w)3 |  |
{t1,t1,t2} | 2(3u′+u)(3v′+v)(1+2v′+v)(1+w)3 | 2(3u′+u)(3v′+v)(1+2v′+v)(1+2w′+w)3 |  |
{t1,t2,t2} | - | - | Â |
{t2,t2,t2} | (1+2u′+u)v′(1+w)3 | (1+2u′+u)v′(1+2w′+w)3 |  |
{t2;t2;t3} | 2(1+2u′+u)(3v′+v)w(1+w) | 2(1+2u′+u)(3v′+v)(3w′+w)(1+2w′+w) |  |
{t2,t3,t3} | - | - | Â |
{t3,t3,t3} | - | (1+2u′+u)(1+2v′+v)w′ |  |
{t1,t1,t3} | 2(3u′+u)(1+2v′+v)2w(1+w) | 2(3u′+u)(1+2v′+v)2(3w′+w)(1+2w′+w) |  |
{t1,t3,t3} | - | - | Â |
{t1,t2,t3} | - | - | Â |