Skip to main content

Table 1 Average and standard deviation of precision, recall and TVD for each gene of the Borellia MLST scheme (B-MLST) and Kallisto, across all parameters combination

From: Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework

PrecisionclpAclpXnifSpepX
B-MLST0.99 ±0.0090.98 ±0.0120.96 ±0.0240.96 ±0.016
Kallisto0.97 ±0.0140.94 ±0.0140.89 ±0.0270.93 ±0.03
Recall    
B-MLST0.95 ±0.0220.94 ±0.0270.90 ±0.050.94 ±0.034
Kallisto0.99 ±0.0040.99 ±0.0050.99 ±0.0030.99 ±0.006
TVD    
B-MLST0.077 ±0.0150.080 ±0.010.119 ±0.0390.087 ±0.024
Kallisto0.029 ±0.0110.041 ±0.0150.085 ±0.0280.046 ±0.022
PrecisionpyrGrecGrplBuvrA
B-MLST0.97 ±0.0240.98 ±0.0130.99 ±0.0070.98 ±0.011
Kallisto0.93 ±0.020.89 ±0.0210.95 ±0.0120.93 ±0.023
Recall    
B-MLST0.92 ±0.0320.95 ±0.0280.94 ±0.0430.96 ±0.026
Kallisto0.98 ±0.0060.99 ±0.0110.99 ±0.0060.99 ±0.005
TVD    
B-MLST0.110 ±0.0190.082 ±0.0280.089 ±0.030.069 ±0.02
Kallisto0.0047 ±0.0180.068 ±0.0180.032 ±0.0110.05 ±0.022