BMC Bioinformatics

Table 1 Average and standard deviation of precision, recall and TVD for each gene of the Borellia MLST scheme (B-MLST) and Kallisto, across all parameters combination

From: Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework

Precision	clpA	clpX	nifS	pepX
B-MLST	0.99 ±0.009	0.98 ±0.012	0.96 ±0.024	0.96 ±0.016
Kallisto	0.97 ±0.014	0.94 ±0.014	0.89 ±0.027	0.93 ±0.03
Recall
B-MLST	0.95 ±0.022	0.94 ±0.027	0.90 ±0.05	0.94 ±0.034
Kallisto	0.99 ±0.004	0.99 ±0.005	0.99 ±0.003	0.99 ±0.006
TVD
B-MLST	0.077 ±0.015	0.080 ±0.01	0.119 ±0.039	0.087 ±0.024
Kallisto	0.029 ±0.011	0.041 ±0.015	0.085 ±0.028	0.046 ±0.022
Precision	pyrG	recG	rplB	uvrA
B-MLST	0.97 ±0.024	0.98 ±0.013	0.99 ±0.007	0.98 ±0.011
Kallisto	0.93 ±0.02	0.89 ±0.021	0.95 ±0.012	0.93 ±0.023
Recall
B-MLST	0.92 ±0.032	0.95 ±0.028	0.94 ±0.043	0.96 ±0.026
Kallisto	0.98 ±0.006	0.99 ±0.011	0.99 ±0.006	0.99 ±0.005
TVD
B-MLST	0.110 ±0.019	0.082 ±0.028	0.089 ±0.03	0.069 ±0.02
Kallisto	0.0047 ±0.018	0.068 ±0.018	0.032 ±0.011	0.05 ±0.022

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ISSN: 1471-2105

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