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Table 2 Average and standard deviation of different statistics for each evolutionary mechanisms

From: Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework

 

Soft-Precision

Soft-Recall

EMD

Precision

Recall

TVD

EM1

0.98 ±0.11

0.96 ±0.13

0.64 ±1.7

0.85 ±0.28

0.86 ±0.23

0.15 ±0.29

EM2

0.96 ±0.12

0.98 ±0.076

0.71 ±1.18

0.81 ±0.21

0.88 ±0.14

0.17 ±0.22

EM2e

0.98 ±0.11

0.97 ±0.1

0.34 ±0.81

0.91 ±0.20

0.92 ±0.17

0.1 ±0.23

EM2n

0.96 ±0.13

0.95 ±0.12

0.6 ±1.35

0.86 ±0.23

0.88 ±0.16

0.14 ±0.25

EM3

0.90 ±0.17

0.88 ±0.13

4.6 ±7.58

0.76 ±0.21

0.76 ±0.17

0.22 ±0.24

 

ADP-Precision

ADP-Recall

ADP-TVD

   

EM1

0.96 ±0.07

0.91 ±0.09

0.07 ±0.058

   

EM2

0.93 ±0.07

0.91 ±0.07

0.26 ±0.16

   

EM2e

0.93 ±0.08

0.91 ±0.08

0.34 ±0.25

   

EM2n

0.92 ±0.09

0.9 ±0.09

0.34 ±0.25

   

EM3

0.94 ±0.07

0.92 ±0.08

0.29 ±0.15

   
 

Soft-Precision

Soft-Recall

EMD

Precision

Recall

TVD

EM1

0.96 ±0.14

0.99 ±0.079

4.1 ±7.0

0.44 ±0.34

0.58 ±0.40

0.62 ±0.37

EM2

0.79 ±0.21

0.91 ±0.16

68.8 ±74.6

0.32 ±0.19

0.44 ±0.27

0.78 ±0.2

EM2e

0.72 ±0.24

0.88 ±0.22

98.9 ±89.4

0.36 ±0.26

0.5 ±0.30

0.72 ±0.26

EM2n

0.76 ±0.23

0.9 ±0.19

98.6 ±90

0.36 ±0.25

0.52 ±0.30

0.71 ±0.24

EM3

0.68 ±0.20

0.79 ±0.2

83.7 ±64

0.29 ±0.2

0.35 ±0.22

0.83 ±0.16

  1. (Top) SDP simulation (Middle/Bottom) Full pipeline simulation: (Middle) ADP statistics, (Bottom) SDP statistics
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BMC Bioinformatics

ISSN: 1471-2105

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