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Table 1 Markov chain transition probabilities: probability for a nucleotide A, C, T or G to be: a) in the first position x1 of a codon, b) in the second position x2 of a codon given the nucleotide at x1, and c) in the third position x3 of a codon given the dinucleotide at x1x2

From: SimSpliceEvol: alternative splicing-aware simulation of biological sequence evolution

Start    x1    x1x2