Fig. 1
From: MADOKA: an ultra-fast approach for large-scale protein structure similarity searching
Computing time and amount of protein at different protein sizes. a shows the average computing time of proteins in the TM-align dataset for structural similarity searching against the whole PDB database by using MADOKA. b indicates the number of structures at different protein sizes in the TM-align dataset. c shows average running time curves with respect to randomly selected proteins from entire TM-align dataset (N=20, 40 and 60 is the number of selected proteins each time). d shows average running time corresponding to three different group of protein split by lengths