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Table 1 Alignment performance comparison on the TM-align dataset

From: MADOKA: an ultra-fast approach for large-scale protein structure similarity searching

MethodRMSDTM-scoreRunning Time (s)
CE6.300.2730.52
SAL6.960.3202.47
TM-align4.990.3480.13
Fr-TM-align4.730.3651.65
MADOKA4.070.5620.02