Fig. 5
From: DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data
Application of DeepShape to reveal translational regulation patterns. a/b mRNA/ribosome abundance PCCs between and inside conditions. c distribution of TE in log 2 scale. d relation between length-normalized mRNA and ribosome abundance. The overall PCC between mRNA and ribosome is 0.62. e Codon Residence Index (CRI) of different codons in control of Replicate 1 (row 1), treat of Replicate 1 (row 2), control of Replicate 2 (row 3) and treat of Replicate 2 (row 4). The values show average CRIs of all transcripts that with length-normalized mRNA and ribosome abundance higher than 10. Significances between control and treat were tested by paired samples Wilcoxon two-sided test