Skip to main content

Table 1 Performance of shape model on genes with different lengths

From: DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data

Length (codons) RiboShape V3a RiboShape V4a RiboShape V7a Shape model (DeepShape)
<=250 0.61 0.53 0.45 0.61
251–500 0.67 0.62 0.52 0.63
501–750 0.61 0.58 0.50 0.59
751–1000 0.52 0.49 0.46 0.57
> 1001 0.54 0.51 0.46 0.58
  1. aReported in RiboShape study [4]. The V3 and V4 spaces are highly smoothed subspaces of the original ribosome distribution profile after wavelet transformation. V3 is smoother than V4. The V7 space is also smoothed, but most similar to the original space. RiboShape performs better in a lower subspace