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Table 3 mRNA and ribosome abundance in the four cell invasion/metastasis genes

From: DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data

GeneTranscriptmRNA (TPM)Ribosome (CDS-length-normalized)
control1control2treat1treat2control1control2treat1treat2
VIMENST00000544301.6 (VIM-001)1268.1511079.6261864.1311606.061530.6991432.324655.713491.6958
ENST00000487938.5 (VIM-002)1.194095.195894.608536.371723.3149051.3865282.495481.02E-20
ENST00000469543.5 (VIM-003)8.62929.64325.484754.47247189.39613.7120442.248840.044353
YBX1ENST00000321358.11 (YBX1–201)932.746837.9641007.04921.105641.5486579.1333228.5892145.99
MTA1ENST00000331320.11 (MTA1–001)7.7217109.442997.800983.1396660.01470.0123511.39E-13
ENST00000405646.5 (MTA1–003)49.296338.331343.285335.868516.5358418.0432918.767167.94493
ENST00000438610.5 (MTA1–004)10.31677.6828514.481914.12766.1703475.1911978.0552256.377454
CD44ENST00000263398.10 (CD44–003)68.073574.286177.463674.5578241.7872311.4829187.2566177.6087
ENST00000434472.6 (CD44–008)3.811675.325148.4267810.17759.71344513.796587.08884913.68229