Table 3 mRNA and ribosome abundance in the four cell invasion/metastasis genes
From: DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data
Gene | Transcript | mRNA (TPM) | Ribosome (CDS-length-normalized) | ||||||
|---|---|---|---|---|---|---|---|---|---|
control1 | control2 | treat1 | treat2 | control1 | control2 | treat1 | treat2 | ||
VIM | ENST00000544301.6 (VIM-001) | 1268.151 | 1079.626 | 1864.131 | 1606.06 | 1530.699 | 1432.324 | 655.713 | 491.6958 |
ENST00000487938.5 (VIM-002) | 1.19409 | 5.19589 | 4.60853 | 6.37172 | 3.314905 | 1.386528 | 2.49548 | 1.02E-20 | |
ENST00000469543.5 (VIM-003) | 8.6292 | 9.6432 | 5.48475 | 4.47247 | 189.396 | 13.71204 | 42.24884 | 0.044353 | |
YBX1 | ENST00000321358.11 (YBX1–201) | 932.746 | 837.964 | 1007.04 | 921.105 | 641.5486 | 579.1333 | 228.5892 | 145.99 |
MTA1 | ENST00000331320.11 (MTA1–001) | 7.72171 | 0 | 9.44299 | 7.80098 | 3.139666 | 0.0147 | 0.012351 | 1.39E-13 |
ENST00000405646.5 (MTA1–003) | 49.2963 | 38.3313 | 43.2853 | 35.8685 | 16.53584 | 18.04329 | 18.76716 | 7.94493 | |
ENST00000438610.5 (MTA1–004) | 10.3167 | 7.68285 | 14.4819 | 14.1276 | 6.170347 | 5.191197 | 8.055225 | 6.377454 | |
CD44 | ENST00000263398.10 (CD44–003) | 68.0735 | 74.2861 | 77.4636 | 74.5578 | 241.7872 | 311.4829 | 187.2566 | 177.6087 |
ENST00000434472.6 (CD44–008) | 3.81167 | 5.32514 | 8.42678 | 10.1775 | 9.713445 | 13.79658 | 7.088849 | 13.68229 | |