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Table 3 mRNA and ribosome abundance in the four cell invasion/metastasis genes

From: DeepShape: estimating isoform-level ribosome abundance and distribution with Ribo-seq data

Gene Transcript mRNA (TPM) Ribosome (CDS-length-normalized)
control1 control2 treat1 treat2 control1 control2 treat1 treat2
VIM ENST00000544301.6 (VIM-001) 1268.151 1079.626 1864.131 1606.06 1530.699 1432.324 655.713 491.6958
ENST00000487938.5 (VIM-002) 1.19409 5.19589 4.60853 6.37172 3.314905 1.386528 2.49548 1.02E-20
ENST00000469543.5 (VIM-003) 8.6292 9.6432 5.48475 4.47247 189.396 13.71204 42.24884 0.044353
YBX1 ENST00000321358.11 (YBX1–201) 932.746 837.964 1007.04 921.105 641.5486 579.1333 228.5892 145.99
MTA1 ENST00000331320.11 (MTA1–001) 7.72171 0 9.44299 7.80098 3.139666 0.0147 0.012351 1.39E-13
ENST00000405646.5 (MTA1–003) 49.2963 38.3313 43.2853 35.8685 16.53584 18.04329 18.76716 7.94493
ENST00000438610.5 (MTA1–004) 10.3167 7.68285 14.4819 14.1276 6.170347 5.191197 8.055225 6.377454
CD44 ENST00000263398.10 (CD44–003) 68.0735 74.2861 77.4636 74.5578 241.7872 311.4829 187.2566 177.6087
ENST00000434472.6 (CD44–008) 3.81167 5.32514 8.42678 10.1775 9.713445 13.79658 7.088849 13.68229