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Table 5 Best-Predicted Proteins using Fuzzy Logic

From: Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge

Combined

BRCA

OVA

Protein Name

Count

Protein Name

Count

Protein Name

Count

ARHGDIB

6

DLG5

6

CRKL

5

DTX3L

5

PHYHD1

6

FMNL1

5

LCP1

5

AR

5

ISG15

5

PARP14

5

EMC3

5

MX1

5

ACTR3

4

S100A14

5

NNMT

5

CARM1

4

SSH3

5

CNN3

4

COTL1

4

ADIRF

4

EIF4G1

4

DDX60

4

AGR3

4

IFIT1

4

DOCK2

4

CAPN2

4

MARCKS

4

IFIT5

4

CMC2

4

NSFL1C

4

  1. The list of proteins whose predictions are most frequently found to have one of the top 100 correlation values to ground truth across 10 cross-validations. These predictions are generated using the fuzzy logic model