Detecting overlapping protein complexes in weighted PPI network based on overlay network chain in quotient space

BMC Bioinformatics

Table 4 Influence of parameters gc

Dataset	gc	Precision	Recall	F-measure	PC	Perfect	AS
DIP	0.1	0.4199	0.7108	0.5279	874	62	5.18
	0.2	0.4011	0.7206	0.5153	945	60	4.79
	0.3	0.3571	0.7402	0.4818	1095	69	3.70
	0.4	0.3561	0.8260	0.4976	1640	103	2.67
	0.5	0.3521	0.8284	0.4942	1667	104	2.60
	0.6	0.3470	0.8211	0.4878	1781	105	2.53
	0.7	0.3499	0.8186	0.4902	1832	103	2.54
	0.8	0.3530	0.8186	0.4933	1844	102	2.56
	0.9	0.3530	0.8186	0.4933	1844	102	2.56
Gavin	0.1	0.6581	0.4167	0.5103	310	38	7.99
	0.2	0.6085	0.4265	0.5015	355	39	6.63
	0.3	0.5630	0.4363	0.4916	405	41	5.13
	0.4	0.5124	0.4510	0.4797	525	49	3.98
	0.5	0.4973	0.4534	0.4743	553	50	3.73
	0.6	0.4879	0.4461	0.4661	621	50	3.46
	0.7	0.4910	0.4436	0.4661	664	46	3.43
	0.8	0.4927	0.4436	0.4669	684	46	3.47
	0.9	0.4949	0.4436	0.4679	687	46	3.49
Krogan	0.1	0.5856	0.5956	0.5906	473	68	4.51
	0.2	0.5658	0.5980	0.5815	509	67	4.27
	0.3	0.5401	0.5980	0.5676	561	68	3.60
	0.4	0.4888	0.6422	0.5551	759	80	2.86
	0.5	0.2728	0.7230	0.3962	780	81	2.82
	0.6	0.3095	0.7230	0.4335	835	83	2.77
	0.7	0.2984	0.7230	0.4225	858	78	2.76
	0.8	0.3090	0.6005	0.4080	868	79	2.79
	0.9	0.4989	0.6471	0.5634	870	79	2.81
MIPS	0.1	0.3784	0.5735	0.4559	703	46	3.95
	0.2	0.3689	0.5760	0.4498	721	47	3.78
	0.3	0.3375	0.5980	0.4315	803	54	3.10
	0.4	0.3231	0.6765	0.4373	1173	72	2.33
	0.5	0.3238	0.6765	0.4379	1186	71	2.32
	0.6	0.3288	0.6691	0.4409	1244	69	2.31
	0.7	0.3299	0.6642	0.4408	1255	67	2.32
	0.8	0.3315	0.6642	0.4423	1258	67	2.32
	0.9	0.3315	0.6642	0.4423	1258	67	2.33

ISSN: 1471-2105