TY - STD TI - Balasubramanian S, Sureshkumar S, Lempe J, et al. Potent induction of Arabidopsis thaliana flowering by elevated growth temperature. PLoS Genet. 2006;2(7):e106. ID - ref1 ER - TY - JOUR AU - Sawa, M. A. AU - Nusinow, D. A. AU - Kay, S. A. PY - 2007 DA - 2007// TI - FKF1 and GIGANTEA complex formation is required for day-length measurement in Arabidopsis JO - Science VL - 318 UR - https://doi.org/10.1126/science.1146994 DO - 10.1126/science.1146994 ID - Sawa2007 ER - TY - JOUR AU - Blázquez, M. A. AU - Weigel, D. PY - 2000 DA - 2000// TI - Integration of floral inductive signals in Arabidopsis JO - Nature VL - 404 UR - https://doi.org/10.1038/35009125 DO - 10.1038/35009125 ID - Blázquez2000 ER - TY - JOUR AU - Morris, K. AU - Thomber, S. AU - Codrai, L. PY - 2010 DA - 2010// TI - DAY NEUTRAL FLOWERING represses CONSTANS to prevent Arabidopsis flowering early in short days JO - Plant Cell VL - 22 UR - https://doi.org/10.1105/tpc.109.066605 DO - 10.1105/tpc.109.066605 ID - Morris2010 ER - TY - STD TI - Balasubramanian S, Weigel D. Temperature induced flowering in Arabidopsis thaliana. Plant Signal Behav. 2006;1(5):227–8. ID - ref5 ER - TY - JOUR AU - Mouradov, A. AU - Cremer, F. AU - Coupland, G. PY - 2002 DA - 2002// TI - Control of flowering time: interacting pathways as a basis for diversity JO - Plant Cell VL - 14 UR - https://doi.org/10.1105/tpc.001362 DO - 10.1105/tpc.001362 ID - Mouradov2002 ER - TY - JOUR AU - Bowman, J. L. AU - Smyth, D. R. AU - Meyerowitz, E. M. PY - 2012 DA - 2012// TI - The ABC model of flower development: then and now JO - Development VL - 139 UR - https://doi.org/10.1242/dev.083972 DO - 10.1242/dev.083972 ID - Bowman2012 ER - TY - JOUR AU - Schwarzsommer, Z. AU - Huijser, P. AU - Nacken, W. PY - 1990 DA - 1990// TI - Genetic control of flower development by homeotic genes in Antirrhinum majus JO - Science VL - 250 UR - https://doi.org/10.1126/science.250.4983.931 DO - 10.1126/science.250.4983.931 ID - Schwarzsommer1990 ER - TY - JOUR AU - Honma, T. AU - Goto, K. PY - 2001 DA - 2001// TI - Complexes of MADS-box proteins are sufficient to convert leaves into floral organs JO - Nature. VL - 409 UR - https://doi.org/10.1038/35054083 DO - 10.1038/35054083 ID - Honma2001 ER - TY - STD TI - Theißen G, Saedler H. Floral quartets. Nature. 2001;409:469-71. ID - ref10 ER - TY - JOUR AU - Kramer, E. M. AU - Jaramillo, M. A. AU - Di, S. V. PY - 2004 DA - 2004// TI - Patterns of gene duplication and functional evolution during the diversification of the AGAMOUS subfamily of MADS box genes in angiosperms JO - Genetics VL - 166 UR - https://doi.org/10.1534/genetics.166.2.1011 DO - 10.1534/genetics.166.2.1011 ID - Kramer2004 ER - TY - JOUR AU - Zheng, Z. AU - Yang, X. AU - Fu, Y. PY - 2017 DA - 2017// TI - Overexpression ofPvPin1, a Bamboo Homolog ofPIN1-Type Parvulin 1, Delays Flowering Time in TransgenicArabidopsisand Rice JO - Front Plant Sci VL - 8 UR - https://doi.org/10.3389/fpls.2017.01526 DO - 10.3389/fpls.2017.01526 ID - Zheng2017 ER - TY - JOUR AU - Ge, W. AU - Zhang, Y. AU - Cheng, Z. PY - 2017 DA - 2017// TI - Main regulatory pathways, key genes and microRNAs involved in flower formation and development of moso bamboo (Phyllostachys edulis) JO - Plant Biotechnol J VL - 15 UR - https://doi.org/10.1111/pbi.12593 DO - 10.1111/pbi.12593 ID - Ge2017 ER - TY - JOUR AU - Shen, Z. AU - Bao, W. AU - Huang, D. -. S. PY - 2018 DA - 2018// TI - Recurrent neural network for predicting transcription factor binding sites JO - Sci Rep VL - 8 UR - https://doi.org/10.1038/s41598-018-33321-1 DO - 10.1038/s41598-018-33321-1 ID - Shen2018 ER - TY - JOUR AU - Guo, W. L. AU - Huang, D. S. PY - 2017 DA - 2017// TI - An efficient method to transcription factor binding sites imputation via simultaneous completion of multiple matrices with positional consistency JO - Mol BioSyst VL - 13 UR - https://doi.org/10.1039/C7MB00155J DO - 10.1039/C7MB00155J ID - Guo2017 ER - TY - JOUR AU - Zhang, Y. AU - Tang, D. AU - Lin, X. PY - 2018 DA - 2018// TI - Genome-wide identification of MADS-box family genes in moso bamboo (Phyllostachys edulis) and a functional analysis of PeMADS5 in flowering JO - BMC Plant Biol VL - 18 UR - https://doi.org/10.1186/s12870-018-1394-2 DO - 10.1186/s12870-018-1394-2 ID - Zhang2018 ER - TY - JOUR AU - Song, X. AU - Zhou, G. AU - Jiang, H. PY - 2011 DA - 2011// TI - Carbon sequestration by Chinese bamboo forests and their ecological benefits: assessment of potential, problems, and future challenges JO - Environ Rev VL - 19 UR - https://doi.org/10.1139/a11-015 DO - 10.1139/a11-015 ID - Song2011 ER - TY - JOUR AU - John, C. K. AU - Nadgauda, R. S. PY - 2002 DA - 2002// TI - Bamboo flowering and famine JO - Curr Sci VL - 82 ID - John2002 ER - TY - JOUR AU - Lin, X. C. AU - Yuan, X. L. AU - Lin, R. PY - 2010 DA - 2010// TI - Studies on floral biology of Phyllostachys violascens (in Chinese) JO - J Fujian Coll Forestry VL - 4 ID - Lin2010 ER - TY - STD TI - Liu SN, Zhu LF, Lin XC, et al. Overexpression of the repressor gene PvFRI-L from Phyllostachys violascens delays flowering time in transgenic Arabidopsis thaliana. Biol Plant. 2016;60(3):1–9. ID - ref20 ER - TY - JOUR AU - Liu, S. AU - Ma, T. AU - Ma, L. PY - 2016 DA - 2016// TI - Ectopic expression of PvSOC1, a homolog of SOC1 from Phyllostachys violascens, promotes flowering in Arabidopsis and rice JO - Acta Physiol Plant VL - 38 UR - https://doi.org/10.1007/s11738-016-2186-7 DO - 10.1007/s11738-016-2186-7 ID - Liu2016 ER - TY - STD TI - Liu S, Qi TT, Ma JJ, et al. Ectopic expression of a SOC1 homolog from Phyllostachys violascens alters flowering time and identity of floral organs in Arabidopsis thaliana. Trees. 2016;30(6):1–13. ID - ref22 ER - TY - JOUR AU - Cheng, Z. AU - Ge, W. AU - Li, L. PY - 2017 DA - 2017// TI - Analysis of MADS-box gene family reveals conservation in floral organ ABCDE model of Moso bamboo (Phyllostachys edulis) JO - Front Plant Sci VL - 8 UR - https://doi.org/10.3389/fpls.2017.00656 DO - 10.3389/fpls.2017.00656 ID - Cheng2017 ER - TY - JOUR AU - Metzker, M. L. PY - 2010 DA - 2010// TI - Sequencing technologies - the next generation JO - Nat Rev Genet VL - 11 UR - https://doi.org/10.1038/nrg2626 DO - 10.1038/nrg2626 ID - Metzker2010 ER - TY - JOUR AU - Wang, Z. AU - Gerstein, M. AU - Snyder, M. PY - 2009 DA - 2009// TI - RNA-Seq: a revolutionary tool for transcriptomics JO - Nat Rev Genet VL - 10 UR - https://doi.org/10.1038/nrg2484 DO - 10.1038/nrg2484 ID - Wang2009 ER - TY - STD TI - Lin X, Yuan X, Lin R, et al. Morphogenesis of indefinite inflorescence of Phyllostachys violascens (Carr.) A.et Riv. J Fujian Coll Forestry. 2012;32(2):141-45. ID - ref26 ER - TY - JOUR AU - Grabherr, M. AU - Haas, B. J. AU - Yassour, M. PY - 2011 DA - 2011// TI - Full-length transcriptome assembly from RNA-Seq data without a reference genome JO - Nat Biotechnol VL - 29 UR - https://doi.org/10.1038/nbt.1883 DO - 10.1038/nbt.1883 ID - Grabherr2011 ER - TY - JOUR AU - Li, B. AU - Dewey, C. N. PY - 2011 DA - 2011// TI - RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome JO - BMC Bioinformatics VL - 12 UR - https://doi.org/10.1186/1471-2105-12-323 DO - 10.1186/1471-2105-12-323 ID - Li2011 ER - TY - JOUR AU - Mortazavi, A. AU - Williams, B. A. AU - Mccue, K. PY - 2008 DA - 2008// TI - Mapping and quantifying mammalian transcriptomes by RNA-Seq JO - Nat Methods VL - 5 UR - https://doi.org/10.1038/nmeth.1226 DO - 10.1038/nmeth.1226 ID - Mortazavi2008 ER - TY - JOUR AU - Stefan, G. T. AU - Juan Miguel, G. G. AU - Javier, T. PY - 2008 DA - 2008// TI - High-throughput functional annotation and data mining with the Blast2GO suite JO - Nucleic Acids Res VL - 36 UR - https://doi.org/10.1093/nar/gkn176 DO - 10.1093/nar/gkn176 ID - Stefan2008 ER - TY - JOUR AU - Finn, R. D. AU - Alex, B. AU - Jody, C. PY - 2014 DA - 2014// TI - Pfam: the protein families database JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1223 DO - 10.1093/nar/gkt1223 ID - Finn2014 ER - TY - BOOK AU - Altschul, S. F. AU - Madden, T. L. AU - Schäffer, A. A. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs ID - Altschul1997 ER - TY - JOUR AU - Altschul, S. F. AU - Gish, W. AU - Miller, W. PY - 1990 DA - 1990// TI - Basic local alignment search tool JO - J Mol Biol VL - 215 UR - https://doi.org/10.1016/S0022-2836(05)80360-2 DO - 10.1016/S0022-2836(05)80360-2 ID - Altschul1990 ER - TY - JOUR AU - Finn, R. D. AU - Clements, J. AU - Eddy, S. R. PY - 2011 DA - 2011// TI - HMMER web server: interactive sequence similarity searching JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr367 DO - 10.1093/nar/gkr367 ID - Finn2011 ER - TY - JOUR AU - Conesa, A. AU - Gotz, S. AU - Garciagomez, J. M. PY - 2005 DA - 2005// TI - Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti610 DO - 10.1093/bioinformatics/bti610 ID - Conesa2005 ER - TY - JOUR AU - Young, M. D. AU - Wakefield, M. J. AU - Smyth, G. K. PY - 2010 DA - 2010// TI - Gene ontology analysis for RNA-seq: accounting for selection bias JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-2-r14 DO - 10.1186/gb-2010-11-2-r14 ID - Young2010 ER - TY - JOUR AU - Xie, C. AU - Mao, X. AU - Huang, J. PY - 2011 DA - 2011// TI - KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkr483 DO - 10.1093/nar/gkr483 ID - Xie2011 ER - TY - JOUR AU - Chin, A. R. AU - Fong, M. Y. AU - Somlo, G. PY - 2016 DA - 2016// TI - Cross-kingdom inhibition of breast cancer growth by plant miR159 JO - Cell Res VL - 26 UR - https://doi.org/10.1038/cr.2016.13 DO - 10.1038/cr.2016.13 ID - Chin2016 ER - TY - JOUR AU - Kumar, S. AU - Nei, M. AU - Dudley, J. T. PY - 2008 DA - 2008// TI - MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences JO - Brief Bioinform VL - 9 UR - https://doi.org/10.1093/bib/bbn017 DO - 10.1093/bib/bbn017 ID - Kumar2008 ER - TY - JOUR AU - Eddy, S. R. PY - 1998 DA - 1998// TI - Profile hidden Markov models JO - Bioinformatics. VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.9.755 DO - 10.1093/bioinformatics/14.9.755 ID - Eddy1998 ER - TY - JOUR AU - Parenicova, L. AU - Folter, S. AU - Kieffer, M. PY - 2003 DA - 2003// TI - Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis new openings to the MADS world JO - Plant Cell VL - 15 UR - https://doi.org/10.1105/tpc.011544 DO - 10.1105/tpc.011544 ID - Parenicova2003 ER - TY - JOUR AU - Pařenicová, L. AU - Falasca, G. AU - Masiero, S. PY - 2004 DA - 2004// TI - Functional characterization of OsMADS18, a member of the AP1/SQUA subfamily of MADS box genes JO - Plant Physiol VL - 135 UR - https://doi.org/10.1104/pp.104.045039 DO - 10.1104/pp.104.045039 ID - Pařenicová2004 ER - TY - JOUR AU - Melzer, R. AU - Theißen, G. PY - 2009 DA - 2009// TI - Reconstitution of ‘floral quartets’ in vitro involving class B and class E floral homeotic proteins JO - Nucleic Acids Res VL - 37 UR - https://doi.org/10.1093/nar/gkp129 DO - 10.1093/nar/gkp129 ID - Melzer2009 ER - TY - JOUR AU - Paolacci, A. R. AU - Tanzarella, O. A. AU - Porceddu, E. PY - 2007 DA - 2007// TI - Molecular and phylogenetic analysis of MADS-box genes of MIKC type and chromosome location of SEP-like genes in wheat (Triticum aestivum L.) JO - Mol Gen Genomics VL - 278 UR - https://doi.org/10.1007/s00438-007-0285-2 DO - 10.1007/s00438-007-0285-2 ID - Paolacci2007 ER - TY - JOUR AU - Sablowski, R. PY - 2007 DA - 2007// TI - Flowering and determinacy in Arabidopsis JO - J Exp Bot VL - 58 UR - https://doi.org/10.1093/jxb/erm002 DO - 10.1093/jxb/erm002 ID - Sablowski2007 ER - TY - JOUR AU - Pinyopich, A. AU - Ditta, G. S. AU - Savidge, B. PY - 2003 DA - 2003// TI - Assessing the redundancy of MADS-box genes during carpel and ovule development JO - Nature VL - 424 UR - https://doi.org/10.1038/nature01741 DO - 10.1038/nature01741 ID - Pinyopich2003 ER - TY - JOUR AU - Pelaz, S. AU - Ditta, G. S. AU - Baumann, E. PY - 2000 DA - 2000// TI - B and C floral organ identity functions require SEPALLATA MADS-box genes JO - Nature VL - 405 UR - https://doi.org/10.1038/35012103 DO - 10.1038/35012103 ID - Pelaz2000 ER - TY - JOUR AU - Immink, R. G. H. AU - Pose, D. AU - Ferrario, S. PY - 2012 DA - 2012// TI - Characterization of SOC1's central role in flowering by the identification of its upstream and downstream regulators JO - Plant Physiol VL - 160 UR - https://doi.org/10.1104/pp.112.202614 DO - 10.1104/pp.112.202614 ID - Immink2012 ER - TY - JOUR AU - Lee, J. AU - Lee, I. PY - 2010 DA - 2010// TI - Regulation and function of SOC1, a flowering pathway integrator JO - J Exp Bot VL - 61 UR - https://doi.org/10.1093/jxb/erq098 DO - 10.1093/jxb/erq098 ID - Lee2010 ER - TY - JOUR AU - Lee, J. H. AU - Yoo, S. J. AU - Park, S. H. PY - 2007 DA - 2007// TI - Role of SVP in the control of flowering time by ambient temperature in Arabidopsis JO - Genes Dev VL - 21 UR - https://doi.org/10.1101/gad.1518407 DO - 10.1101/gad.1518407 ID - Lee2007 ER - TY - JOUR AU - Gao, J. AU - Zhang, Y. AU - Zhang, C. PY - 2014 DA - 2014// TI - Characterization of the floral Transcriptome of Moso bamboo (Phyllostachys edulis) at different flowering developmental stages by Transcriptome sequencing and RNA-Seq analysis JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0098910 DO - 10.1371/journal.pone.0098910 ID - Gao2014 ER - TY - JOUR AU - Peng, Z. AU - Lu, Y. AU - Li, L. PY - 2013 DA - 2013// TI - The draft genome of the fast-growing non-timber forest species moso bamboo (Phyllostachys heterocycla) JO - Nat Genet VL - 45 UR - https://doi.org/10.1038/ng.2569 DO - 10.1038/ng.2569 ID - Peng2013 ER - TY - JOUR AU - Zhang, X. M. AU - Zhao, L. AU - Larsonrabin, Z. PY - 2012 DA - 2012// TI - De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae) JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0042082 DO - 10.1371/journal.pone.0042082 ID - Zhang2012 ER - TY - JOUR AU - Shih, M. C. AU - Chou, M. L. AU - Yue, J. J. PY - 2014 DA - 2014// TI - BeMADS1 is a key to delivery MADSs into nucleus in reproductive tissues-De novo characterization of Bambusa edulis transcriptome and study of MADS genes in bamboo floral development JO - BMC Plant Biol VL - 14 UR - https://doi.org/10.1186/1471-2229-14-179 DO - 10.1186/1471-2229-14-179 ID - Shih2014 ER - TY - JOUR AU - Ya-Ting, L. U. AU - Yuan, X. L. AU - Lin, X. C. PY - 2012 DA - 2012// TI - Endogenous hormone changes during floral bud morphological differentiation of Phyllostachys violascens JO - J Zhejiang A F Univ VL - 29 ID - Ya-Ting2012 ER - TY - JOUR AU - Ding, X. PY - 2007 DA - 2007// TI - Hormonal regulation mechanism of flowering of Phyllostachys violascens under mulching cultivation JO - Sci Silvae Sin VL - 43 ID - Ding2007 ER - TY - JOUR AU - Bartrina, I. AU - Otto, E. AU - Strnad, M. PY - 2011 DA - 2011// TI - Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana JO - Plant Cell VL - 23 UR - https://doi.org/10.1105/tpc.110.079079 DO - 10.1105/tpc.110.079079 ID - Bartrina2011 ER - TY - JOUR AU - Theissen, G. AU - Becker, A. AU - Di, R. A. PY - 2000 DA - 2000// TI - A short history of MADS-box genes in plants JO - Plant Mol Biol VL - 42 UR - https://doi.org/10.1023/A:1006332105728 DO - 10.1023/A:1006332105728 ID - Theissen2000 ER - TY - JOUR AU - Becker, A. AU - Theissen, G. PY - 2003 DA - 2003// TI - The major clades of MADS-box genes and their role in the development and evolution of flowering plants JO - Mol Phylogenet Evol VL - 29 UR - https://doi.org/10.1016/S1055-7903(03)00207-0 DO - 10.1016/S1055-7903(03)00207-0 ID - Becker2003 ER - TY - JOUR AU - Coen, E. AU - Meyerowitz, E. M. PY - 1991 DA - 1991// TI - The war of the whorls: genetic interactions controlling flower development JO - Nature. VL - 353 UR - https://doi.org/10.1038/353031a0 DO - 10.1038/353031a0 ID - Coen1991 ER - TY - JOUR AU - Lee, S. AU - Kim, J. AU - Son, J. S. PY - 2003 DA - 2003// TI - Systematic reverse genetic screening of T-DNA tagged genes in rice for functional genomic analyses: MADS-box genes as a test case JO - Plant Cell Physiol VL - 44 UR - https://doi.org/10.1093/pcp/pcg156 DO - 10.1093/pcp/pcg156 ID - Lee2003 ER - TY - JOUR AU - Heijmans, K. AU - Ament, K. AU - Rijpkema, A. S. PY - 2012 DA - 2012// TI - Redefining C and D in the petunia ABC JO - Plant Cell VL - 24 UR - https://doi.org/10.1105/tpc.112.097030 DO - 10.1105/tpc.112.097030 ID - Heijmans2012 ER - TY - JOUR AU - Theissen, G. PY - 2001 DA - 2001// TI - Development of floral organ identity: stories from the MADS house JO - Curr Opin Plant Biol VL - 4 UR - https://doi.org/10.1016/S1369-5266(00)00139-4 DO - 10.1016/S1369-5266(00)00139-4 ID - Theissen2001 ER - TY - JOUR AU - Robles, P. PY - 2004 DA - 2004// TI - The SEP4 gene of Arabidopsis thaliana functions in floral organ and meristem identity JO - Curr Biol VL - 14 UR - https://doi.org/10.1016/j.cub.2004.10.028 DO - 10.1016/j.cub.2004.10.028 ID - Robles2004 ER - TY - BOOK AU - Theißen, G. AU - Melzer, R. PY - 2007 DA - 2007// TI - Combinatorial Control of Floral Organ Identity by MADS-domain Transcription Factors: Wiley-Blackwell ID - Theißen2007 ER -