Table 3 Description of top 10 features from one-hot, PSDSP and KNF encodings
Rank | In one-hot | PSDSP | KNF |
|---|---|---|---|
1 | T at 0 position | Dinucleotide at − 1 and 0 position | Frequency of GA |
2 | A at −2 position | Dinucleotide at 0 and + 1 position | Frequency of TG |
3 | C at −3 position | Dinucleotide at −2 and − 1 position | Frequency of AG |
4 | C at −1 position | Dinucleotide at −3 and − 2 position | Frequency of CT |
5 | G at −3 position | Dinucleotide at −5 and − 4 position | Frequency of GG |
6 | G at −1 position | Dinucleotide at −4 and − 3 position | Frequency of AA |
7 | G at −6 position | Dinucleotide at −9 and − 8 position | Frequency of CC |
8 | G at −9 position | Dinucleotide at −8 and − 7 position | Frequency of TC |
9 | G at −8 position | Dinucleotide at −10 and − 9 position | Frequency of CA |
10 | G at −10 position | Dinucleotide at −6 and − 5 position | Frequency of GC |