NmSEER V2.0: a prediction tool for 2′-O-methylation sites based on random forest and multi-encoding combination

BMC Bioinformatics

Table 4 Performance of NmSEER V2.0 at the true positive rate of 0.2, 0.5 and 0.8

Cell Type	True positive rate	Threshold	Specificity	Precision	F₁-score
Both (default)	0.2	0.338	0.995	0.438	0.274
Both (default)	0.5	0.201	0.955	0.186	0.271
Both (default)	0.8	0.103	0.763	0.064	0.118
HeLa	0.2	0.338	0.994	0.389	0.264
HeLa	0.5	0.205	0.949	0.162	0.244
HeLa	0.8	0.104	0.745	0.059	0.110
HEK293	0.2	0.369	0.997	0.556	0.297
HEK293	0.5	0.250	0.981	0.349	0.411
HEK293	0.8	0.136	0.894	0.132	0.226

ISSN: 1471-2105