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Table 3 Recall rate of sequencing based methods on 10 samples

From: A systematic evaluation of copy number alterations detection methods on real SNP array and deep sequencing data

Sample

BICseq

CNVnorm

FREEC

CNVseq

rSWseg

Varscan

CNVnator

RDXplorer

ReadDepth

357

0.9

0.97

0.97

0.82

0.45

0.84

0.68

0

0.06

620380

0.97

0.99

0.99

0.92

0.16

0.94

0.15

0.01

0.26

K2110056

0.57

0.98

0.74

0.44

0.23

0.27

0.05

0

0.08

K2150024

0.91

0.93

0.17

0.74

0.02

0.9

0

0.01

0.05

K2310007

0.99

1

0.89

0.96

0

0.98

0.2

0.01

0.01

K2310024

0.99

1

0.88

0.96

0.52

0.97

0.36

0

0.2

K2310030

0.99

0.99

0.94

0.96

0.27

0.98

0.48

0.01

0.7

AVG

0.91

0.98

0.8

0.83

0.24

0.84

0.27

0.01

0.19

RS114527

0.17

0.23

0.74

0.18

0.01

0.17

0.01

0

0.08

K2110097

0.39

0.4

0.26

0.35

0

0.3

0.18

0

0.71

K2150051

0.57

0.94

0.55

0.52

0.01

0.46

0.04

0.01

0.04

AVG

0.38

0.52

0.52

0.35

0.01

0.31

0.08

0

0.28