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Table 4 Jaccard index of sequencing based methods on 10 samples

From: A systematic evaluation of copy number alterations detection methods on real SNP array and deep sequencing data

SampleBICSeqCNVnormFREECCNVseqrSWseqVarscanCNVnatorRDXplorerReadDepth
3570.780.220.790.590.350.640.5700.05
6203800.650.130.660.60.10.730.080.020.04
K21100560.450.60.680.320.190.270.0700.08
K21500240.730.230.050.550.010.810.010.010.04
K23100070.60.050.120.5300.70.190.020.01
K23100240.660.060.140.520.410.720.290.010.05
K23100300.730.190.490.640.140.850.640.010.43
AVG0.660.210.420.540.170.670.260.010.1
RS1145270.130.160.690.150.020.140.0200.06
K21100970.380.320.260.3500.30.2200.63
K21500510.470.280.420.4100.360.030.010.04
AVG0.330.250.460.30.010.270.0900.24