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Table 2 The average number of hits per complex obtained by our docking algorithm with LSC and four other docking approaches with shape-based scoring functions on the protein docking benchmark 4.0 of 176 test cases when the top 100, 500, 1000, and 2000 predictions were considered

From: Pushing the accuracy limit of shape complementarity for protein-protein docking

Method

Bound docking

 

Unbound docking

 

100

500

1000

2000

 

100

500

1000

2000

LSC

3.21

6.26

8.38

11.64

 

0.83

2.54

3.94

6.51

ZDOCK 2.1

2.18

4.51

6.38

8.97

 

0.61

1.89

2.96

4.84

MolFit/G

1.96

4.36

6.37

9.47

 

0.36

1.47

2.62

4.55

GRAMM

0.76

1.73

2.54

3.66

 

0.18

0.51

0.86

1.63

FTDock/G

1.05

2.43

3.87

5.82

 

0.18

0.65

1.13

2.08