Table 2 Number of full-length transcripts recovered by the de novo assemblers
From: DTA-SiST: de novo transcriptome assembly by using simplified suffix trees
Assembler | Dog dataset | Human dataset | ||||
|---|---|---|---|---|---|---|
Identified | Reconstructed | Candidates | Identified | Reconstructed | Candidates | |
Trinity | 1017 | 1663 | 96018 | 1913 | 3039 | 437730 |
BinPacker | 1149 | 2601 | 73419 | 1491 | 3449 | 192674 |
IDBA-Tran | 598 | 1011 | 69757 | 1376 | 2196 | 182651 |
SOAPdenovo-Trans | 1005 | 1006 | 85028 | / | / | / |
Oases | 530 | 957 | 113361 | 1762 | 3126 | 439865 |
IsoTree | 1354 | 2974 | 81597 | 2015 | 3821 | 218269 |
DTA-SiST-E | 1504 | 3916 | 103461 | 2175 | 4930 | 278255 |
DTA-SiST-H | 1370 | 2514 | 71356 | 1950 | 3959 | 199642 |