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Table 1 The list of the tuned hyperparameters

From: Fast and accurate microRNA search using CNN

Hyperparameter

Prob/pair/mixed matrix

One-hot matrix

Number of convolution layers

2, 4, 6

1

Kernel size for convolution

2, 3, 5

[8, 16], [4, 8, 12, 16], [2, 4, 6, 8, 10, 12, 14, 16]

  

[2, 4, 6, 8, 10, 12, 14, 16]

  

[2, 4, 6, 8, 10, 12, 14, 16]

Number of kernels (1st convolution layer)

16, 32, 64

64, 128, 256, 512

Number of kernels (2nd convolution layer)

32, 64, 128

not applicable

Pooling method

Max pooling, average pooling

 

Number of units (1st fully connected layer)

64, 128,256

128, 256, 512

Number of units (2nd fully connected layer)

32, 64, 128

not applicable

Learning algorithm

Adam, SGD

 

Dropout rate

0.7, 0.5

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