Table 3 Prediction accuracy(%) and F-score(%) of CNNs trained on families of different sizes
Method | Rfam-300 | Rfam-120 | Rfam-60 | Rfam-30 | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Acc.1 | F-score | Acc. | F-score | Acc. | F-score | Acc. | F-score |
Pair matrix | 89.91 | 89.99 | 77.71 | 76.87 | 71.27 | 68.82 | 60.60 | 56.32 |
Prob matrix | 83.69 | 83.28 | 72.86 | 71.61 | 69.83 | 67.66 | 59.37 | 54.72 |
Mixed matrix | 87.78 | 87.32 | 74.94 | 73.67 | 66.15 | 63.67 | 53.31 | 48.71 |
One-hot matrix | 99.25 | 99.25 | 98.87 | 98.88 | 98.48 | 98.45 | 97.76 | 97.71 |