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Table 1 Features comparison of different deduplication or consensus read generating tools

From: Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data

 SAMtoolsPicardgencorePicardUMI-toolsgencore
Non-UMI modeUMI mode
No need to sort by read name ++ ++
No need to fix mate information ++ ++
No need to add UMI tag+++ ++
No need to sort by position again ++ ++
JSON/Text Metrics++++ +
HTML Report  +  +