Skip to main content

Table 1 Features comparison of different deduplication or consensus read generating tools

From: Gencore: an efficient tool to generate consensus reads for error suppressing and duplicate removing of NGS data

 

SAMtools

Picard

gencore

Picard

UMI-tools

gencore

Non-UMI mode

UMI mode

No need to sort by read name

 

+

+

 

+

+

No need to fix mate information

 

+

+

 

+

+

No need to add UMI tag

+

+

+

 

+

+

No need to sort by position again

 

+

+

 

+

+

JSON/Text Metrics

+

+

+

+

 

+

HTML Report

  

+

  

+