SAMtools | Picard | gencore | Picard | UMI-tools | gencore | |
---|---|---|---|---|---|---|
Non-UMI mode | UMI mode | |||||
No need to sort by read name | + | + | + | + | ||
No need to fix mate information | + | + | + | + | ||
No need to add UMI tag | + | + | + | + | + | |
No need to sort by position again | + | + | + | + | ||
JSON/Text Metrics | + | + | + | + | + | |
HTML Report | + | + |