Table 2 Number of enriched biclusters found by each algorithm on each dataset
From: Identifying gene-specific subgroups: an alternative to biclustering
dataset | CCA | ISA | K-CPGC | Plaid | QUBIC | Spectral | xMOTIFs | CPGC |
|---|---|---|---|---|---|---|---|---|
1 | 1 (5.0) | 7 (1.0) | 6 (2.0) | 1 (5.0) | 0 (7.5) | 0 (7.5) | 2 (3.0) | 1 (5.0) |
2 | 0 (7.5) | 8 (1.0) | 6 (2.0) | 1 (5.0) | 1 (5.0) | 0 (7.5) | 2 (3.0) | 1 (5.0) |
3 | 1 (6.0) | 8 (1.0) | 7 (2.0) | 1 (6.0) | 5 (3.0) | 0 (8.0) | 3 (4.0) | 1 (6.0) |
4 | 1 (5.5) | 2 (2.5) | 1 (5.5) | 2 (2.5) | 0 (8.0) | 5 (1.0) | 1 (5.5) | 1 (5.5) |
5 | 2 (4.0) | 6 (1.5) | 2 (4.0) | 1 (6.5) | 6 (1.5) | 0 (8.0) | 2 (4.0) | 1 (6.5) |
6 | 1 (5.5) | 7 (1.0) | 5 (2.0) | 2 (4.0) | 0 (7.5) | 0 (7.5) | 3 (3.0) | 1 (5.5) |
7 | 2 (5.0) | 3 (4.0) | 8 (1.0) | 1 (7.0) | 7 (2.5) | 7 (2.5) | 1 (7.0) | 1 (7.0) |
8 | 3 (5.0) | 8 (1.5) | 8 (1.5) | 1 (7.5) | 6 (3.0) | 5 (4.0) | 2 (6.0) | 1 (7.5) |
9 | 1 (7.0) | 2 (4.5) | 7 (1.0) | 1 (7.0) | 6 (2.5) | 6 (2.5) | 2 (4.5) | 1 (7.0) |
10 | 1 (5.0) | 1 (5.0) | 5 (1.0) | 1 (5.0) | 0 (8.0) | 2 (2.0) | 1 (5.0) | 1 (5.0) |
11 | 0 (7.5) | 1 (4.5) | 4 (1.5) | 0 (7.5) | 4 (1.5) | 1 (4.5) | 1 (4.5) | 1 (4.5) |
12 | 2 (3.5) | 8 (1.0) | 7 (2.0) | 0 (7.5) | 2 (3.5) | 0 (7.5) | 1 (5.5) | 1 (5.5) |
13 | 0 (7.0) | 3 (1.5) | 3 (1.5) | 0 (7.0) | 2 (3.5) | 0 (7.0) | 2 (3.5) | 1 (5.0) |
14 | 2 (4.5) | 3 (2.5) | 1 (6.5) | 0 (8.0) | 2 (4.5) | 10 (1.0) | 3 (2.5) | 1 (6.5) |
15 | 3 (2.0) | 3 (2.0) | 2 (4.5) | 0 (8.0) | 3 (2.0) | 2 (4.5) | 1 (6.5) | 1 (6.5) |
16 | 1 (5.5) | 8 (1.5) | 8 (1.5) | 0 (7.5) | 4 (3.0) | 0 (7.5) | 2 (4.0) | 1 (5.5) |
17 | 0 (7.0) | 3 (2.0) | 1 (4.5) | 0 (7.0) | 3 (2.0) | 0 (7.0) | 3 (2.0) | 1 (4.5) |
18 | 2 (2.0) | 1 (4.0) | 3 (1.0) | 0 (7.0) | 1 (4.0) | 0 (7.0) | 0 (7.0) | 1 (4.0) |
19 | 8 (2.5) | 0 (7.0) | 9 (1.0) | 6 (4.0) | 8 (2.5) | 0 (7.0) | 0 (7.0) | 1 (5.0) |
20 | 6 (2.0) | 3 (4.5) | 10 (1.0) | 3 (4.5) | 4 (3.0) | 0 (8.0) | 2 (6.0) | 1 (7.0) |
21 | 2 (4.0) | 1 (6.5) | 8 (1.0) | 4 (2.0) | 2 (4.0) | 0 (8.0) | 2 (4.0) | 1 (6.5) |
22 | 6 (2.0) | 1 (6.5) | 8 (1.0) | 0 (8.0) | 3 (4.5) | 5 (3.0) | 3 (4.5) | 1 (6.5) |
23 | 2 (2.5) | 0 (7.0) | 4 (1.0) | 0 (7.0) | 2 (2.5) | 0 (7.0) | 1 (4.5) | 1 (4.5) |
24 | 4 (1.5) | 0 (6.5) | 4 (1.5) | 0 (6.5) | 0 (6.5) | 0 (6.5) | 1 (3.5) | 1 (3.5) |
25 | 5 (1.5) | 0 (7.0) | 5 (1.5) | 3 (3.0) | 0 (7.0) | 0 (7.0) | 1 (4.5) | 1 (4.5) |
26 | 4 (1.5) | 0 (7.5) | 4 (1.5) | 2 (4.5) | 2 (4.5) | 0 (7.5) | 3 (3.0) | 1 (6.0) |
27 | 4 (1.0) | 1 (6.5) | 3 (2.0) | 2 (4.0) | 2 (4.0) | 0 (8.0) | 2 (4.0) | 1 (6.5) |
28 | 5 (1.0) | 0 (7.0) | 4 (2.0) | 2 (3.5) | 2 (3.5) | 0 (7.0) | 0 (7.0) | 1 (5.0) |
29 | 3 (3.5) | 1 (6.0) | 6 (1.0) | 3 (3.5) | 4 (2.0) | 0 (8.0) | 1 (6.0) | 1 (6.0) |
30 | 5 (1.0) | 0 (7.5) | 2 (2.5) | 1 (5.0) | 1 (5.0) | 0 (7.5) | 2 (2.5) | 1 (5.0) |
31 | 4 (2.5) | 1 (5.5) | 5 (1.0) | 4 (2.5) | 1 (5.5) | 0 (8.0) | 1 (5.5) | 1 (5.5) |
32 | 8 (1.5) | 0 (7.5) | 5 (4.5) | 7 (3.0) | 8 (1.5) | 0 (7.5) | 5 (4.5) | 1 (6.0) |
33 | 6 (3.0) | 0 (8.0) | 7 (2.0) | 3 (4.0) | 9 (1.0) | 1 (6.0) | 1 (6.0) | 1 (6.0) |
34 | 6 (2.0) | 0 (7.5) | 4 (3.0) | 3 (4.5) | 7 (1.0) | 0 (7.5) | 3 (4.5) | 1 (6.0) |
35 | 7 (1.0) | 0 (6.5) | 5 (2.0) | 2 (3.0) | 0 (6.5) | 0 (6.5) | 0 (6.5) | 1 (4.0) |
avg. rank | 3.7 | 4.5 | 2.1 | 5.4 | 3.9 | 6.2 | 4.7 | 5.6 |