Fig. 3
From: LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation
Pie charts exhibiting the optimal consensus strategies (with highest TTS). Illustration of the optimal results for the provided dataset derived from LMAP_S consensus histogram report (Additional file 5: Table S8). Each pie chart presents the results for each gene showing at the center the highest TTS value in parenthesis. The arc lines surrounding each pie chart highlights the amount of optimal consensus strategies. The fraction at the bottom right corner of each chart shows the number of consensus strategies with equal highest TTS over the total number of strategies. The three squared cases (genes ATP8, COX2 and ND4L) are the only ones showing a unique consensus strategy with highest TTS. These optimal strategies are “ATP8_MAFFTF2_TRIMALS_DNA_UB”, “COX2_PRANKCDF_MAXALIGN_DNA_UB” and “ND4L_MAFFTEI_MAXALIGN_DNA_UB”, from where it is clearly visible the different optimal algorithms (from AE and ARC Stages). Notably the optimal CC option (DNA) was the same in all three. For the remaining cases, it is possible to take any of the consensus strategies as optimal as long as they have the highest TTS