BMC Bioinformatics

Table 2 Precision, sensitivity of multiple tools on different coverage data. P indicates precision. S indicates sensitivity

From: DeepSV: accurate calling of genomic deletions from high-throughput sequencing data using deep convolutional neural network

Tool	12×		24×		36×		48×
Tool	P	S	P	S	P	S	P	S
Pindel	0.18	0.80	0.45	0.50	0.33	0.60	0.40	0.48
BreakDancer	0.50	0.86	0.39	0.51	0.68	0.63	0.70	0.46
Delly	0.30	0.83	0.43	0.57	0.69	0.51	0.76	0.38
CNVnator	0.17	0.18	0.36	0.20	0.61	0.59	0.75	0.74
Breakseq2	0.69	0.71	0.71	0.75	0.80	0.79	0.86	0.85
Lumpy	0.13	0.87	0.21	0.93	0.32	0.82	0.42	0.73
GenomeStrip2	0.36	0.42	0.82	0.69	0.86	0.78	0.75	0.60
SVseq2	0.57	0.28	0.43	0.22	0.30	0.33	0.23	0.36
DeepSV	0.72	0.81	0.85	0.89	0.91	0.92	0.93	0.90

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ISSN: 1471-2105

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