Table 2 Detail on the breakpoints of three gene fusion results which have close HGT breakpoints (HGT breakpoints located in 200 bp upstream or downstream around gene fusion points)
From: LEMON: a method to construct the local strains at horizontal gene transfer sites in gut metagenomics
Sample | H4009C2 | C3003C3 | C3003C3 | |
|---|---|---|---|---|
Upstream | NZ_GG703852.1 | NZ_ACEP01000119.1 | NZ_DS981501.1 | |
Downstream | NZ_JRNC01000070.1 | NZ_ACEP01000074.1 | NZ_CP015401.2 | |
Upstream breakpoint | HGT | 751372 | 25274 | 4185 |
| Â | LUMPY | 751114 | 25275 | 4220 |
| Â | STAR-Fusion | 751131 | 25282 | 4195 |
Downstream breakpoint | HGT | 199 | 27544 | 963348 |
| Â | LUMPY | 127 | 27558 | 963349 |
| Â | STAR-Fusion | 223 | 27588 | 963357 |
Upstream gene name | NZ_GG703852.1_gene2906 | NZ_ACEP01000074.1_gene1544 | NZ_DS981501.1_gene822 | |
Downstream gene name | NZ_JRNC01000070.1_gene2118 | NZ_ACEP01000119.1_gene553 | NZ_CP015401.2_gene767 | |